Working with OMOP concepts - OMOPHub.com API

Get a Concept

Retrieve a concept by its OMOP concept ID:

const { data, error } = await client.concepts.get(201826);
if (error) throw new Error(error.message);

console.log(data.concept_name);   // "Type 2 diabetes mellitus"
console.log(data.vocabulary_id);  // "SNOMED"
console.log(data.domain_id);      // "Condition"

The SDK accepts conceptId === 0 - the OMOP “unmapped” sentinel - and forwards it to the server without client-side validation.

Get by Vocabulary Code

Look up a concept using a vocabulary-specific code:

// SNOMED concept by its code
const { data } = await client.concepts.getByCode('SNOMED', '44054006');
console.log(data?.concept_name); // "Type 2 diabetes mellitus"

// ICD-10-CM concept
const result = await client.concepts.getByCode('ICD10CM', 'E11');

// Include synonyms and relationships
const enriched = await client.concepts.getByCode('SNOMED', '44054006', {
  includeSynonyms: true,
  includeRelationships: true,
});
console.log(enriched.data?.synonyms);
console.log(enriched.data?.relationships);

// Specific vocabulary release
const pinned = await client.concepts.getByCode('SNOMED', '44054006', {
  vocabRelease: '2025.2',
});

Batch Get Concepts

Retrieve up to 100 concepts in a single request:

const { data, error } = await client.concepts.batch({
  conceptIds: [201826, 4329847, 1112807],
});
if (error) throw new Error(error.message);

for (const concept of data.concepts) {
  console.log(`${concept.concept_id}: ${concept.concept_name}`);
}

console.log(`Retrieved: ${data.summary?.found}`);
console.log(`Failed: ${data.summary?.failed}`);

With optional flags:

const result = await client.concepts.batch({
  conceptIds: [201826, 4329847, 1112807],
  includeRelationships: true,
  includeSynonyms: true,
  includeMappings: true,
  vocabularyFilter: ['SNOMED'],
  standardOnly: false,
});

The SDK validates conceptIds.length is between 1 and 100 and returns a validation_error synthetically (no network call) if outside that range.

Autocomplete Suggestions

Get concept suggestions for autocomplete UI:

const { data, error, meta } = await client.concepts.suggest('diab', {
  pageSize: 10,
});
if (error) throw new Error(error.message);

// Suggestions are an array - pagination on outer `meta`
for (const concept of Array.isArray(data) ? data : data?.data ?? []) {
  console.log(concept.concept_name);
}

console.log(meta?.pagination?.total_items);
console.log(meta?.pagination?.has_next);

client.concepts.suggest() returns data as either ConceptSuggestion[] (bare array) or { data: ConceptSuggestion[] } (envelope), depending on the API version answering the request. Both shapes are valid per the SDK type (ConceptSuggestion[] | PaginatedData<ConceptSuggestion>); the Array.isArray(data) ? data : data?.data ?? [] pattern above handles both. Pagination always lives on the outer meta.pagination, never on the inner shape.

Filter by vocabulary and domain:

const filtered = await client.concepts.suggest('diab', {
  vocabularyIds: ['SNOMED'],
  domainIds: ['Condition'],
  pageSize: 20,
});

Get Relationships

Get relationships for a concept. Both client.concepts.relationships(...) and client.relationships.get(...) hit the same wire endpoint - pick whichever reads more naturally at the call site:

const { data, error, meta } = await client.relationships.get(201826);
if (error) throw new Error(error.message);

for (const rel of data.relationships) {
  console.log(`${rel.relationship_id}: ${rel.target_concept_name}`);
}

console.log(`Page ${meta?.pagination?.page} of ${meta?.pagination?.total_pages}`);

Filter by relationship type, vocabulary, and direction:

const filtered = await client.relationships.get(201826, {
  relationshipIds: ['Is a', 'Subsumes'],
  vocabularyIds: ['SNOMED'],
  standardOnly: true,
  page: 1,
  pageSize: 50,
});

// Include reverse relationships
const bothDirections = await client.relationships.get(201826, {
  includeReverse: true,
  domainIds: ['Condition'],
});

Find concepts related to a given concept (Phoebe-style relatedness):

const { data, error } = await client.concepts.related(201826, {
  pageSize: 10,
});
if (error) throw new Error(error.message);

for (const related of data.related_concepts) {
  console.log(
    `${related.concept_name} (${related.relatedness_type}): ${related.relatedness_score.toFixed(2)}`,
  );
}

Filter by relationship type and minimum score:

const filtered = await client.concepts.related(201826, {
  relationshipTypes: ['Is a', 'Maps to'],
  minScore: 0.5,
  pageSize: 20,
  vocabRelease: '2025.1',
});

Get Recommended Concepts

Get curated concept recommendations using the OHDSI Phoebe algorithm:

const { data } = await client.concepts.recommended({
  conceptIds: [201826, 4329847],
});

for (const group of data?.recommendations ?? []) {
  console.log(`\nRecommendations for ${group.source_concept_id}:`);
  for (const rec of group.recommendations.slice(0, 5)) {
    console.log(`  - ${rec.concept_name} (${rec.vocabulary_id})`);
  }
}

With filters and pagination:

const filtered = await client.concepts.recommended({
  conceptIds: [201826],
  relationshipTypes: ['Has finding', 'Associated finding'],
  vocabularyIds: ['SNOMED', 'LOINC'],
  domainIds: ['Condition', 'Measurement'],
  standardOnly: true,
  page: 1,
  pageSize: 50,
});

Server-side caps enforced client-side: conceptIds ≤ 100, relationshipTypes ≤ 20, vocabularyIds/domainIds ≤ 50. Violations return validation_error without hitting the network.

Navigate Hierarchy

Get Complete Hierarchy

Fetch ancestors and descendants in one request, in either flat or graph format:

// Flat format (default) - concepts + paths arrays
const flat = await client.hierarchy.get(201826, {
  maxLevels: 3,
  vocabularyIds: ['SNOMED'],
});

console.log(`Total ancestors: ${flat.data?.summary?.total_ancestors}`);
console.log(`Total descendants: ${flat.data?.summary?.total_descendants}`);

// Graph format for visualisation (D3.js, Cytoscape, …)
const graph = await client.hierarchy.get(201826, {
  format: 'graph',
  maxLevels: 3,
});

console.log(`Nodes: ${graph.data?.nodes?.length}`);
console.log(`Edges: ${graph.data?.edges?.length}`);

// Advanced filtering
await client.hierarchy.get(201826, {
  domainIds: ['Condition'],
  relationshipTypes: ['Is a'],
  maxResults: 100,
  includeInvalid: false,
});

Hierarchy Get Parameters

Parameter	Type	Default	Description
`conceptId` (positional)	number	required	The concept ID
`format`	`'flat' \| 'graph'`	`'flat'`	Response format
`vocabularyIds`	string[]	-	Filter to specific vocabularies
`domainIds`	string[]	-	Filter to specific domains
`maxLevels`	number	10	Max hierarchy levels (server caps at 20)
`maxResults`	number	-	Max results per direction
`relationshipTypes`	string[]	-	Relationship types to follow
`includeInvalid`	boolean	true	Include deprecated/invalid concepts

Get Ancestors

Find parent concepts in the hierarchy:

const { data, meta } = await client.hierarchy.ancestors(201826, {
  maxLevels: 3,
  vocabularyIds: ['SNOMED'],
  relationshipTypes: ['Is a'],
  includeDistance: true,
  includePaths: false,
  includeInvalid: false,
  page: 1,
  pageSize: 100,
});

for (const ancestor of data?.ancestors ?? []) {
  const level = ancestor.min_levels_of_separation ?? 0;
  console.log(`${'  '.repeat(level)}${ancestor.concept_name}`);
}

console.log(`Max depth: ${data?.summary?.max_hierarchy_depth}`);
console.log(`Page ${meta?.pagination?.page} of ${meta?.pagination?.total_pages}`);

Get Descendants

Find child concepts in the hierarchy:

const { data, meta } = await client.hierarchy.descendants(201826, {
  maxLevels: 2,
  vocabularyIds: ['SNOMED'],
  relationshipTypes: ['Is a'],
  includeDistance: true,
  includePaths: false,
  includeInvalid: false,
  domainIds: ['Condition'],
  page: 1,
  pageSize: 100,
});

for (const descendant of data?.descendants ?? []) {
  console.log(descendant.concept_name);
}

Get Relationship Types

Get the catalog of OMOP CDM relationship types:

const { data, meta } = await client.relationships.types({
  page: 1,
  pageSize: 100,
});

for (const relType of data?.relationship_types ?? []) {
  console.log(`${relType.relationship_id}: ${relType.relationship_name}`);
}

console.log(`Total types: ${meta?.pagination?.total_items}`);

Concept Get Options

Include synonyms, relationships, hierarchy, and pin a vocabulary release:

// Concept with synonyms
const withSynonyms = await client.concepts.get(201826, {
  includeSynonyms: true,
});

// Concept with synonyms and relationships
const enriched = await client.concepts.get(201826, {
  includeSynonyms: true,
  includeRelationships: true,
});

// Concept with hierarchy information
const withHierarchy = await client.concepts.get(201826, {
  includeHierarchy: true,
});

// Pin to a specific vocabulary release
const pinned = await client.concepts.get(201826, {
  vocabRelease: '2025.2',
});

Parameters

Parameter	Type	Default	Description
`conceptId` (positional)	number	required	OMOP concept ID - `0` is accepted as the “unmapped” sentinel
`includeRelationships`	boolean	false	Include related concepts
`includeSynonyms`	boolean	false	Include concept synonyms
`includeHierarchy`	boolean	false	Include hierarchy summary
`vocabRelease`	string	-	Pin to a specific vocabulary release (e.g. `"2025.2"`)

​Get a Concept

​Get by Vocabulary Code

​Batch Get Concepts

​Autocomplete Suggestions

​Get Relationships

​Get Related Concepts

​Get Recommended Concepts

​Navigate Hierarchy

​Get Complete Hierarchy

​Hierarchy Get Parameters

​Get Ancestors

​Get Descendants

​Get Relationship Types

​Concept Get Options

​Parameters

Get a Concept

Get by Vocabulary Code

Batch Get Concepts

Autocomplete Suggestions

Get Relationships

Get Related Concepts

Get Recommended Concepts

Navigate Hierarchy

Get Complete Hierarchy

Hierarchy Get Parameters

Get Ancestors

Get Descendants

Get Relationship Types

Concept Get Options

Parameters