Documentation Index
Fetch the complete documentation index at: https://docs.omophub.com/llms.txt
Use this file to discover all available pages before exploring further.
List All Domains
Get a list of all available OMOP domains:
# Basic list
result = client.domains.list()
for domain in result["data"]["domains"]:
print(domain["domain_id"])
# Include concept counts and statistics
result = client.domains.list(include_stats=True)
for domain in result["data"]["domains"]:
print(f"{domain['domain_id']}: {domain['concept_count']} concepts")
Get Domain Concepts
Retrieve all concepts within a specific domain:
# Basic usage
result = client.domains.concepts("Condition", page_size=100)
for concept in result["data"]["concepts"]:
print(f"{concept['concept_name']} ({concept['concept_id']})")
# Filter by vocabulary
result = client.domains.concepts(
"Condition",
vocabulary_ids=["SNOMED", "ICD10CM"],
page_size=50
)
# Standard concepts only
result = client.domains.concepts(
"Drug",
vocabulary_ids=["RxNorm"],
standard_only=True,
page_size=100
)
# Include invalid/deprecated concepts
result = client.domains.concepts(
"Procedure",
include_invalid=True,
page=1,
page_size=50
)
# Pagination
print(f"Page {result['meta']['pagination']['page']} of {result['meta']['pagination']['total_pages']}")
print(f"Total: {result['meta']['pagination']['total_items']} concepts")
Parameters
| Parameter | Type | Default | Description |
|---|
domain_id | str | required | Domain identifier (e.g., “Condition”, “Drug”) |
vocabulary_ids | list[str] | None | Filter to specific vocabularies |
standard_only | bool | False | Return only standard concepts |
include_invalid | bool | True | Include deprecated concepts |
page | int | 1 | Page number |
page_size | int | 50 | Results per page (max 1000) |